SETI, biotechnology and grid computing

1 - I can do better 2 - Jury's out 3 - Pretty darn good 4 - Splendiferous 5 - Awesometastic by 2 people | Log in to rate

Ranked #2,699 in Tech & Geek, #67,636 overall

SETI and Biotechnology and Grid Computing

What do search for extraterrestrials (SETI) and biotechnology have in common? They need massive amounts of computing power. As a matter of fact, the SETI @ Home project at University of California Berkeley pioneered use of grid computing - millions of individual computers, each working on a small task, then reporting results to the central computer, getting another small task to work on, etc, etc, etc. Put together, their processing power rivals the biggest supercomputers on Earth.

On the left - an aerial photo of the Arecibo Observatory by Seth Shostak of the SETI Institute - the 1000 ft radiotelescope collects radio signals that are analyzed by SETI @ Home program looking for sings of intelligent life in the Universe.

How does grid computing work? 

The key to grid computing is the ability to break up work into small, independent chunks that can be worked on by different computers - this actually is a difficult task, and most scientific or business processes cannot be broken up into independent parts. But some tasks - like analyzing radiotelescope data, or protein folding, are perfectly suited to be broken up into independent units. Thus SETI scientists became pioneers of the grid computing field. SETI screen saver was the first widely used grid computing application.
Volunteers downloaded a screen saver, their machines started processing a chunk of work. When the computations were completed, their computer connected to the main server, uploaded results of the computations, and downloaded another chunk of work to be done - all in the background, without bothering the human owner of the machine.

SETI and grid computing 

Mathematical computations performed on signals received by radiotelescopes are a perfect fit for grid computing - they also are quite time consuming to process, and the amount of data received each day is staggering. SETI scientists quickly ran out of computer time to process all the data. They thought about all those millions of personal computers in the world - most of them sitting idle most of the day... and decided to see if they could harness all that wasted computing power (in aggregate, greater than the most powerful supercomputers). Originally, SETI @ Home produced a screen saver - so that they would only use the computing power when the machine was idle - whenever a screen saver started up - instead of drawing little patterns on the screen, the computer performed mathematical analysis of radio signals received by the 1000 ft Arecibo radiotelescope. Individual computer users would download the screen saver, and whenever their computer was idle, the SETI screen saver would perform scientific calculations.
Over time, the program was expanded so it could work not only as a screensaver, but also run in the background, so even why the user was actively working on his or her machine, some (small) amount of computing power was used to do calculations.
Since humans are notoriously slow compared to computers, the machine actually had plenty of time to switch to the math calculations, then come back and respond to the input from the human - all so fast, that the human user never noticed any slowdown in the performance of her machine.
Of course, the choice to run the program in the background, or as a screen saver always belongs to the user of the machine.
Today, this program has been expanded into a platform that allows other scientists, not just SETI, to use the donated power of millions of personal computers to work on a variety of scientific problems. You can read more about this project (and join if you so desire) at University of California Berkeley SETI @ HOME

SETI at home in action 

Runtime:
views
Comments:

curated content from YouTube

SETI at CafePress 

Here is a magnetic tile that shows what's on a computer screen while running SETI @ HOME program.
Powered by CafePress

Books about SETI - feel free to vote them up or down. 

I found all of them interesting - but then I like this kind of stuff :-) :-)

So what about Biotech? 

Well, biotechnology also needs a lot of computing power. In particular, one task, protein folding, can be easily broken up into small chunks of work - perfectly fitting the grid computing paradigm.
So Stanford University scientists copied the Berkeley concept and applied it to protein folding - creating Folding @ Home program - to use donated computer power to try out different ways that proteins can be folded. Such analysis can be helpful, for example, in drug discovery.

Protein folding video 

Protein folding simulation, from denatured to native state.

The movie presents an animation of a protein GB1 folding from denatured to the native structure. The folding process of the 56-residue protein was explored by a multiscale modeling. The multiscale simulations are based on the idea of hierarchical approach. Coarse-grained effective search of the conformational space is followed by reliable transition into the all-atom resolution. The movie in better quality for download is available at the Laboratory website www.biocomp.chem.uw.edu.pl

Runtime: 132
25263 views
9 Comments:

curated content from YouTube

While looking at all this scientific stuff - don't forget the little ones! They need to play everyday! 

I think getting toys that make kids happy is one of the best things anyone can do - remember - they will never be kids again.

Here is a link to a whole bunch of electronic toys for little ( and not so little ) kids.

Electronic toys

For older kids and adults, check out the Lego Mindstorms NXT robotic kit:

Lego Mindstorms NXT robot

Books about protein folding 

To be honest, I only included the books so you could see the pretty pictures on the covers. This stuff is really technical - unless you are a molecular biologist - forget it.
I tried to read my wife's books (she is a molecular biologist) - well... after about 10 pages I decided "it's all Greek to me".

Protein Structure Prediction (Methods in Molecular Biology)

Amazon Price: $109.00 (as of 11/27/2009) Buy Now

Lectures on Statistical Physics and Protein Folding

Amazon Price: $41.00 (as of 11/27/2009) Buy Now

If we could only apply grid computing to fun and money...  

Check out this lense for Exchange Traded Funds info
About ETFs.

Couple other lenses to visit - to take a break from the money game:
Fun

and more fun

Back to money stuff:

Wealthencyclopedia.com

Astronomy Tools on Amazon 

Celestron 21061 AstroMaster 70 AZ Refractor Telescope

Amazon Price: $59.99 (as of 11/27/2009) Buy Now

Celestron 21024 FirstScope Telescope

Amazon Price: $38.74 (as of 11/27/2009) Buy Now

Celestron NexStar 130 SLT Computerized Telescope

Amazon Price: $299.99 (as of 11/27/2009) Buy Now

Celestron NexStar 114 SLT Computerized Telescope

Amazon Price: Too low to display (as of 11/27/2009) Buy Now

Discounted Subscriptions to Science Magazines 

Grid Computing on Amazon 

Grid Computing for Developers (Programming Series)

Amazon Price: $37.96 (as of 11/27/2009) Buy Now

Introduction to Grid Computing (Chapman & Hall/Crc Numerical Analysis and Scient Computing)

Amazon Price: $60.16 (as of 11/27/2009) Buy Now

Grid Computing: Techniques and Applications (Chapman & Hall/Crc Computational Science)

Amazon Price: $79.95 (as of 11/27/2009) Buy Now

Grid Computing: The Savvy Manager's Guide (The Savvy Manager's Guides)

Amazon Price: $42.95 (as of 11/27/2009) Buy Now

Other places of interest 

New Guestbook 

submit

by retired

Hi

Retired, yeah, right :-)

Have a great day.

(more)

Explore related pages

Create a Lens!